代謝組學(xué)數(shù)據(jù)分析小工具匯總

This is probably the most comprehensive metabolomic data analysis gadget ever assembled

挺多圖都想重做，例如熱圖，韋恩圖，氣泡圖等等。而且我看有些雜志對(duì)各種圖還有特殊要求，想想就覺(jué)得費(fèi)勁。
There are a lot of images that want to be redone, like heat maps, Venn diagram, bubble maps, etc. . And I see that some magazines have special requirements for various kinds of pictures, which is difficult to think about.

不用擔(dān)心這些，我這里有幾個(gè)代謝組學(xué)的作圖小工具，能解決代謝組學(xué)大部分的作圖需求。
Don’t worry about that. I’ve got a couple of metabonomics mapping tools that address most of the mapping needs of metabonomics.

1. 繪制熱圖
1. Heat map
熱圖（Heatmap）因其生動(dòng)飽滿的信息和豐富的色彩變化，一直是SCI文章中的寵兒。在代謝組學(xué)實(shí)驗(yàn)中，經(jīng)常會(huì)使用熱圖來(lái)表示代謝物在不同組別中的變化情況。
Heatmap (Heatmap) has always been the favorite of SCI articles because of its vivid and full information and rich color changes. In metabonomics experiments, thermograms are often used to show the changes of metabolites in different groups.
1. 在線制作熱圖——方便快捷
1. Create heat maps online -- quick and easy
推薦指數(shù)：★★?Recommendation: ★★網(wǎng)址：http://www.heatmapper.ca/expression/
Something:?http://www.heatmapper.ca/expression/
該平臺(tái)制作熱圖流程簡(jiǎn)單，上手較快。上傳數(shù)據(jù)后即可出圖，還支持各種參數(shù)的修改。
The platform for the production of heat map simple process, faster to use. Upload data can be out of the map, but also support the modification of various parameters.

2. Excel制作熱圖——區(qū)分?jǐn)?shù)值大小?2. Excel creates heat maps -- to distinguish between numerical values推薦指數(shù)：★★?Recommendation: ★★?如果只是想用顏色區(qū)分每個(gè)值的大小，那我們可以通過(guò)調(diào)整Excel單元格的色階來(lái)區(qū)分?jǐn)?shù)值。 If you just want to color-code each value, you can do this by adjusting the color scale of the Excel cell具體操作步驟可見(jiàn)帕諾米克云課堂的鏈接：?Detailed instructions can be found at the Pannomicron classroom link:https://www.bilibili.com/video/BV17y4y1J7vB?from=search&seid=15078149466503377923
3. Heml軟件——熱圖專用軟件
3. HEML software -- heat map specific software
推薦指數(shù)：?Recommendations:★★★?★★★★★?軟件下載地址：http://hemi.biocuckoo.org/down.php?Heml是一款專用于繪制熱圖的軟件，與Excel和Graphpad等軟件工具相比，在繪制熱圖上遠(yuǎn)勝于前兩者，能和R軟件繪制的熱圖相媲美。上傳數(shù)據(jù)后即可出來(lái)熱圖，還支持多種參數(shù)修改。 HEML is a dedicated to draw heat map software, and Excel and Graphpad software tools, in drawing heat map than the former two, and R software drawing heat map comparable. Upload data can be out of the heat map, but also support a variety of parameters to modify

2. 韋恩圖繪圖
20. Venn diagram
韋恩圖能夠很直觀的反映我們的篩選工作，獲取韋恩圖我們常用的方法是通過(guò)在線平臺(tái)來(lái)實(shí)現(xiàn)的。
Venn diagram was able to visualize our filtering efforts, and the method we used to get Venn diagram was through an online platform.
1. 韋恩圖在線繪制——最常見(jiàn)的平臺(tái)?1. Venn diagram online rendering -- the most common platform推薦指數(shù)：?Recommendations:★★★?★★★★★網(wǎng)址：http://bioinformatics.psb.ugent.be/webtools/Venn/?該平臺(tái)的使用比較簡(jiǎn)單，上傳各元素的數(shù)據(jù)后點(diǎn)擊Submit就可以直接出圖了?？尚薷牡膮?shù)有韋恩圖的顏色及形狀等。 The platform is simple to use, upload the data of each element and click Submit to figure directly. Modifiable parameters include Venn diagram’s color and shape

2. 韋恩圖在線繪制——簡(jiǎn)單粗暴
2. Venn diagram online -- plain and simple
推薦指數(shù)：?Recommendations:★★網(wǎng)址：https://bioinfogp.cnb.csic.es/tools/venny/index.html?該平臺(tái)使用十分簡(jiǎn)便，輸入list內(nèi)容即可自動(dòng)得出韋恩圖的結(jié)果。 The platform is so easy to use that you can type in a list and automatically get Venn diagram’s results

3. 綜合工具
3. Comprehensive tools
目前市面上生信分析的工具很多，正處于一個(gè)百花齊放的狀態(tài)，各個(gè)平臺(tái)作圖沒(méi)有統(tǒng)一的標(biāo)準(zhǔn)，圖的類型也不盡相同。大家可以根據(jù)個(gè)人喜好，選擇使用。
1. TBtools軟件 ——小巧好用的繪圖工具箱?1. TBtools -- a small and easy-to-use drawing toolbox推薦指數(shù)： ★?Recommendation: ★★★★下載地址：http://cj-chen.github.io/tbtools/Introduction/?TBtools是一個(gè)集合了非常多生信處理的小工具，使用方便，入門門檻極低。不光是前面所提到的熱圖，韋恩圖；常見(jiàn)的諸如火山圖，PCA等基礎(chǔ)圖表也可以通過(guò)該軟件解決。B站，知乎等平臺(tái)有較多關(guān)于該軟件的介紹，而且開(kāi)發(fā)者陳程杰博士還設(shè)有專門QQ交流群，可以為使用者解答操作過(guò)程中出現(xiàn)的問(wèn)題。 TBtools is an easy-to-use, low-barrier-to-entry widget that combines a lot of raw letter processing. Not only the heat maps mentioned earlier, Venn diagram; basic charts such as volcano maps, PCA, etc. can also be solved with the software. B, Zhihu platform has more about the software introduction, and the developer Dr. Chen Chengjie also has a special QQ exchange group, users can answer the operation of the problem

2. hiplot-最良心的科研繪圖平臺(tái)?Hiplot-the most conscientious research mapping platform推薦指數(shù)：?Recommendations:★★★★★網(wǎng)址：https://hiplot.com.cn/basic?這是小編見(jiàn)過(guò)最最最良心的科研繪圖平臺(tái)了，關(guān)鍵是完！全！免！費(fèi)！知道這網(wǎng)站，從此作圖不求人。使用該網(wǎng)站最大的便利之處在于不用自己寫(xiě)代碼，可以直接在瀏覽器上實(shí)現(xiàn)在線一鍵化繪圖。不光作圖速度快，可調(diào)參數(shù)多，而且所包含的圖表類型特別豐富，想要的圖表幾乎都可以在該網(wǎng)站找到。該網(wǎng)站所包含的小工具相信也會(huì)成為老師們科研上的一大助力。 This is a small series has seen the most conscience of the scientific research mapping platform, the key is the end! All of them! Free of charge! Fay! Know this website, from now on the drawing does not beg people. The biggest advantage of using the site is not to write their own code, you can directly in the browser to achieve online one-click drawing. Not only the drawing speed, adjustable parameters, but also contains a particularly rich type of chart, almost all the charts can be found in the site. The gadgets included on the site are also expected to be a big help to teachers in their research

3. Metaboanalyst——專門的代謝組學(xué)分析平臺(tái)?3. Metaaboanalyst -- a platform for metabonomics analysis
推薦指數(shù)：?Recommendations:★★★★?★★★★★★
網(wǎng)頁(yè)地址：https://www.metaboanalyst.ca/faces/home.xhtml?Metaboanalyst是一款操作簡(jiǎn)單、功能強(qiáng)大的代謝組學(xué)數(shù)據(jù)分析軟件，該平臺(tái)幾乎包含了代謝組學(xué)研究中所能使用到的所有數(shù)據(jù)處理和數(shù)據(jù)分析方法。而且所得出的結(jié)果都可以導(dǎo)出，生成結(jié)果報(bào)告。 Metaaboanalyst is a simple and powerful data analysis software for metabonomics, which contains almost all the data processing and data analysis methods that can be used in metabonomics research. And the resulting results can be exported to generate results report

4. Biodeep——墻！裂！推！薦?4.biodeep -- wall! Crack! Recommendation推薦指數(shù)：?Recommendations:★★★★?★★★★★★★網(wǎng)址：http://www.biodeep.cn/?Biodeep代謝組云平臺(tái)可用于非靶向代謝組、全局精準(zhǔn)非靶向代謝組、靶向代謝組、脂質(zhì)組等數(shù)據(jù)處理，輕松作圖，圖片顏值高，適用于文章發(fā)表以及論文出圖。 Biodeep metabonomics cloud platform can be used for data processing of non-target metabonomics, global precise non-target metabonomics, target metabonomics, lipid group, etc. , for publication of articles and for drawing of papers1. 代謝組學(xué)分析復(fù)雜、統(tǒng)計(jì)方法繁多，云平臺(tái)提供了完整解決方案。
2. 針對(duì)用戶需求設(shè)計(jì)，客戶可自行剔除異常樣本數(shù)據(jù)，也可自選選擇對(duì)比組別進(jìn)行分析，無(wú)基礎(chǔ)也能完成整套分析。 2. According to the user demand design, the customer can eliminate the abnormal sample data, can also choose the contrast group to analyze, no foundation can complete the whole set of analysis3. 布局在最新的華為云平臺(tái)，可滿足現(xiàn)有的分析需求，并可一鍵升級(jí)配置，以滿足更廣泛的用戶需求。 3. The layout on the latest Huawei Cloud Platform can meet existing analysis needs and can be configured with a one-click upgrade to meet a wider range of user needs4. 作為少有的代謝組學(xué)分析平臺(tái)，為客戶量身打造自主化分析服務(wù)，高效快捷獲取數(shù)據(jù)圖、表等，省時(shí)省力，節(jié)約時(shí)間成本。 4. As a rare metabonomics analysis platform, it can provide customers with customized analysis service, efficiently and quickly obtain data charts and tables, save time and labor, and save time and cost

結(jié)語(yǔ)
Conclusion
以上只是列舉了代謝組學(xué)繪圖中常見(jiàn)的分析工具。還有很多方法可以滿足老師的作圖要求（R，origin,matlab,pathon等）。老師們可根據(jù)自己的需要，選擇合適的工具。希望諾米代謝本次的分享能助力老師在代謝組學(xué)的分析航道上乘風(fēng)破浪，一往無(wú)前。
These are just a few of the common analytical tools used in metabonomics mapping. There are many ways to meet the teacher’s drawing requirements (R, origin, Matlab, pathon, etc.) . Teachers can choose the right tools according to their needs. Hopefully, this sharing of Nomi, Trentino’s metabolisms will help teachers navigate the analysis channel of metabonomics, Walk the Line.