源碼閱讀網(wǎng)40天挑戰(zhàn)spring核心源碼
? ? -o post_recal_data_sample1.table
#generate before/after plots
java -jar $GATK \
? ? -T AnalyzeCovariates \
? ? -R $DB/hg19.fa \
? ? -L chr22 \ ?
? ? -before recal_data_sample1.table \
? ? -after post_recal_data_sample1.table \
? ? -plots recalibration_sample1_plots.pdf
#Apply the recalibration to your sequence data
java -jar $GATK \
? ? -T PrintReads \
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